Class
FrequencyDistribution
Holds a collection of objects of a specific type, where each object represents
the frequency (absolute or relative probability) of a particular residue which is a member
of a fixed sequence alphabet.
Parameters
The type of sequence which is considered. Metafunctions: Value | |
The type of probability distribution. Metafunctions: Spec Default: Remarks: It is preferable to use |
Metafunctions
| Type of iterator objects that are used to traverse the container. | |
| Type of an object that represents a position in a container. | |
| Type of an object that is suitable to hold size information. | |
| The spec of a class. | |
| Type of the items in the container. |
Functions
| Counts the number of times each residue of a fixed sequence alphabet occurs in a given sequence. | |
| Counts the number of times each residue of a fixed sequence alphabet occurs in a given set of sequences. | |
| Adds a value of a specific type to each element of a given FrequencyDistribution object. | |
| Determines the background letter frequencies in a given dataset | |
| The begin of a container. | |
| Resets an object. | |
| Concatenates the background frequency with the profile for the motif component. | |
| Coverts a residue to a frequency distribution (profile). | |
| The end of a container. | |
| The number of items/characters. | |
| Logarithmizes each element of a given FrequencyDistribution object. | |
| Determines the normalized frequencies. | |
| Determines the residue position in a given FrequencyDistribution object with the maximum frequency. | |
| Determines the sum of all frequencies in a given FrequencyDistribution object. |
Remarks
The number of objects in FrequencyDistribution equals the size of the sequence alphabet.
SeqAn - Sequence Analysis Library - www.seqan.de