Class
Gaps
Stores the gaps in a gapped sequences.
Parameters
Type of the ungapped sequence. Metafunctions: Source | |
The specializing type. Metafunctions: Spec |
Metafunctions
Type for reading values. | |
Type of iterator objects that are used to traverse the container. | |
Type of an object that represents a position in a container. | |
Reference type. | |
The underlying sequence for alignments or gaps data structures. | |
The spec of a class. | |
Type of the items in the container. |
Functions
Assigns the source to a new value. | |
The begin of a container. | |
Remove blanks from a gapped sequence. | |
Count blanks at a specific position in a gapped sequence. | |
Creates a new source. | |
Test if object depends from it's source. | |
Makes an object independent from other objects. | |
Test if there is a source. | |
The end of a container. | |
Access to the value. | |
A value that identifies the underlying sequence. | |
Insert one blank into a gapped sequence. | |
Insert blanks into a gapped sequence. | |
Test a gapped sequence for gaps at a specific position. | |
The number of items/characters. | |
Moves the source to a new value. | |
Removes one blank from a gapped sequence. | |
Removes blanks from a gapped sequence. | |
Let an external object be the source. | |
The source of an object. | |
Begin of the source segment. | |
End of the source segment. | |
The used part of the source. | |
Reference to the value. |
Remarks
SeqAn - Sequence Analysis Library - www.seqan.de