Class
Pseudocount
Holds the pseudocounts for each residue of a given sequence alphabet.
Pseudocount
CMode
PMode
Pseudocount<TValue, TSpec>
Parameters
TSpec
Specialization tag for determining the pseudocount method.
Types: CMode, PMode
TValue
The type of sequence which is considered.
Metafunctions: Value
Types: AminoAcid, Dna
Specializations
CMode Represents the C ("constant") computation scheme for handling "zero" probabilities.
PMode Represents the P computation scheme for handling "zero" probabilities.
Metafunctions
ValueType of the items in the container.
Functions
convertSetOfPatternsToProfileConverts a set of sequence patterns into a profile.
normalizeDetermines the normalized frequencies.
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