Class
MotifFinder
Holds the algorithm parameter values and the motif instance(s) found by the appropriate motif discovery algorithm.
MotifFinder<TValue, TSpec>
Parameters
TSpec
The motif finding algorithm to search with.
TValue
The type of sequences to be analyzed.
Metafunctions: Value
Types: AminoAcid, Dna
Specializations
EPatternBranching Represents the ePatternBranching algorithm of Davila and Rajasekaran.
PMS1 Represents the PMS1 algorithm developed by Rajasekaran et al.
PMSP Represents the PMSP algorithm of Davila et al.
Projection Represents the PROJECTION algorithm of Buhler and Tompa.
Metafunctions
ValueType of the items in the container.
Functions
displayResultDisplays all found motif candidates. In the case of the Projection Motif Finder the function displays the consensus pattern of the found motif candidate.
findMotifRepresents the main function which is used to start the search for noticeable motif patterns.
Example Programs
SeqAn - Sequence Analysis Library - www.seqan.de