Class
MotifFinder
Holds the algorithm parameter values and the motif instance(s) found by the appropriate
motif discovery algorithm.
MotifFinder | |||||||||||||||||||||||||||||||||
Parameters
The motif finding algorithm to search with. | |
The type of sequences to be analyzed. Metafunctions: Value |
Specializations
Represents the ePatternBranching algorithm of Davila and Rajasekaran. | |
Represents the PMS1 algorithm developed by Rajasekaran et al. | |
Represents the PMSP algorithm of Davila et al. | |
Represents the PROJECTION algorithm of Buhler and Tompa. |
Metafunctions
Type of the items in the container. |
Functions
Displays all found motif candidates. In the case of the Projection Motif Finder the function displays the consensus pattern of the found motif candidate. | |
Represents the main function which is used to start the search for noticeable motif patterns. |
Example Programs
SeqAn - Sequence Analysis Library - www.seqan.de