Function
alignment
Returns an alignment of the occurences of the representative substring in the index text.
alignment(iterator)
Parameters
iterator
An iterator of a Suffix Tree.
Types: VSTree Iterator
Return Values
A local alignment corresponding to the seed of the iterator.
Remarks
The representative must uniquely occur in every sequence (e.g. in MUMs), otherwise the seed returned is one many.
SeqAn - Sequence Analysis Library - www.seqan.de