Function
bandedAlignment
Calculates a banded alignment around a Seed.
bandedAlignmnet(align, seed, k, score)
Parameters
align
An alignment dataStructure containing two sequences (sections). The sequence (parts) must be equal to the part which is covered by the seed.
Types: Align
seed
The seed for wich the banded alignmnent shall be constructed.
Types: Seed
k
A value describing the additional extension of the diagonal band.
score
The score matrix used.
Types: Simple Score
Return Values
The score of the optimal banded alignment given in align.
SeqAn - Sequence Analysis Library - www.seqan.de