Function
getDistanceMatrix
Computes a pairwise distance matrix from an alignment graph.
getDistanceMatrix(graph, mat [, tag])
getDistanceMatrix(graph, mat [, ktup] [, alphabet], KmerDistance)
Parameters
graph
An alignment graph containing the sequences and possible alignment edges.
mat
Out-parameter:Pairwise distance matrix.
Types: String
ktup
Length of k-mers.
Remarks: For KmerDistance the length of the k-mers.
alphabet
Alphabet
Remarks: For KmerDistance the alphabet to use for k-mer counting (e.g., compressed alphabets).
tag
Distance tag
Default: KmerDistance
Remarks: Possible values are LibraryDistance or KmerDistance.
Return Values
void
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