Function
globalChaining
Calculates the best global chain using the Gusfield-Algorithm with scores (ManhattanDistance) and without.
globalChainingManhattan(source, result)
globalChainingManhattan(source, result, gapCost, xLength, yLength)
Parameters
source
The set of seeds to chain.
result
Container in which the result should be stored. The chain is in reversed order.
gapCost
Gap cost value.
xLength
Length of the first sequence.
yLength
Length of the second sequence.
Return Values
The score of the chain.
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