Overview
Concepts
Classes
Specializations
Shortcuts
Functions
Alignments
Alphabets
Array Handling
Blast
Chaining
Comparisons
Containers
Content Manipulation
Dependent Objects
Graph
Index
alignment
bwtAt
childAt
childrenAreLeaves
countChildren
countOccurrences
createBWTable
createChildTable
createCountArray
createLCPTable
createQGramIndex
createQGramIndexDirOnly
createQGramIndexSAOnly
createSuffixArray
createWotdIndex
dirAt
emptyParentEdge
getFibre
getFrequency
getOccurrence
getOccurrences
getOccurrencesBWT
goDown
goRight
goUp
hash
hash2
hash2Next
hashNext
hashUpper
indexBWT
indexChildTab
indexCreate
indexDir
indexLCP
indexLCPE
indexRawSA
indexRawText
indexRequire
indexSA
indexShape
indexSupplied
indexText
isLeaf
isLeftMaximal
isPartiallyLeftExtensible
isRightTerminal
isRoot
isUnique
lca
lcp
lcpAt
lcpeAt
nodeHullPredicate
nodePredicate
orderOccurrences
parentEdgeFirstChar
parentEdgeLabel
parentEdgeLength
parentRepLength
rawtextAt
repLength
representative
saAt
stringToShape
weight
Input/Output
Iteration
Map
Memory
Miscellaneous
Motif Search
Pipelining
Scoring
Searching
Seed Handling
Sequences
Metafunctions
Tags
Adaptions
Examples
Searching