Class Specialization
FullInfo
Stores all pieces of information delivered with an alignment in a Blast report.
BlastHsp
FullInfo
FullInfo
Specialization of
Functions
databaseOrientationPlusOrientation of the database sequence within a Blast HSP alignment.
getAlignmentTurns a HSP from a Blast search into an Alignment object. (BlastHsp)
getBitScoreThe bit score associated with a Blast HSP.
getDatabaseBeginThe begin position of the HSP on the database sequence. (BlastHsp)
getDatabaseEndThe end position of the HSP on the database sequence. (BlastHsp)
getEValueThe e-value associated with a Blast HSP. (BlastHsp)
getNumGapsThe number of gaps within a Blast HSP alignment.
getQueryBeginThe begin position of the HSP on the query sequence. (BlastHsp)
getQueryEndThe end position of the HSP on the query sequence. (BlastHsp)
getScoreThe Smith-Waterman score associated with a Blast HSP.
lengthThe number of items/characters. (BlastHsp)
queryOrientationPlusOrientation of the query sequence within a Blast HSP alignment.
Example Programs
Include Headers
blast.h
SeqAn - Sequence Analysis Library - www.seqan.de