Class Specialization
GappedShape
A variable gapped shape.
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GappedShape | |||||||
Parameters
The Value type of the string the shape is applied to (e.g. |
Specialization of
Metafunctions
| Number of elements in a fixed-size container. (Shape) | |
| Type of an object that is suitable to hold size information. (Shape) | |
| Type of the items in the container. (Shape) | |
| Number of different values a value type object can have. (Shape) | |
| Number of relevant positions in a shape. (Shape) |
Member Functions
| Constructor |
Functions
| Builds an index on a StringSet storing how often a q-gram occurs in each sequence. (Shape) | |
| Builds a q-gram index on a sequence. (Shape) | |
| Builds the directory of a q-gram index on a sequence. (Shape) | |
| Builds the suffix array of a q-gram index on a sequence. (Shape) | |
| Computes a (lower) hash value for a shape applied to a sequence. (Shape) | |
| Computes a unique hash value of a shape, even if it is shorter than its span. (Shape) | |
| Computes a unique hash value for the adjacent shape, even if it is shorter than q. (Shape) | |
| Computes the hash value for the adjacent shape. (Shape) | |
| Computes an upper hash value for a shape applied to a sequence. (Shape) | |
| Shortcut for | |
| The number of items/characters. (Shape) | |
| Takes a shape given as a string of '1' (relevant position) and '0' (irrelevant position) and converts it into a Shape object. | |
| Reference to the value. (Shape) | |
| Number of relevant positions in a shape. (Shape) |
Remarks
A GappedShape must be initialized first with a valid shape. To do so, call stringToShape.
See Also
SeqAn - Sequence Analysis Library - www.seqan.de