Class Specialization
PMode
Represents the P computation scheme for handling "zero" probabilities.
Pseudocount<TValue, PMode>
Parameters
TValue
The type of sequence which is considered.
Types: AminoAcid, Dna
Specialization of
Metafunctions
ValueType of the items in the container. (Pseudocount)
Functions
convertSetOfPatternsToProfileConverts a set of sequence patterns into a profile. (Pseudocount)
normalizeDetermines the normalized frequencies. (Pseudocount)
Remarks
The P mode computation scheme distributes the pseudocounts among the various residue according to their background probabilities.
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