Class
LocalAlignmentFinder
Stores the information necessary for local alignment dynamic programming.
LocalAlignmentFinder<TScoreValue>
Parameters
TScoreValue
The value type that is used for scoring the alignments.
Remarks: Use Value to get the value type for a given class.
Functions
smithWatermanComputes the best local alignment of the (two) sequences given in align.
smithWatermanGetNextComputes next best local alignment.
SeqAn - Sequence Analysis Library - www.seqan.de