Class
Seed
Describes a seed.
Parameters
The type number that schuld be used. Must have negative numbers (e.g. int/long). | |
The seed type used. |
Specializations
Describes a seed with start and end position2 and diagonal upper and lower bounds. Additionaly diagonal segments between start and end position2 are stored. | |
Data structure which represents a seed of multiple sequences. | |
Describes a seed with start and end position and diagonal upper and lower bounds. |
Functions
Adds a seed to an existing set. | |
Calculates a banded alignment around a Seed. | |
Dimension of a seed. | |
Returns the diagonal of the end point. | |
Extends a seed. | |
Returns the most left diagonal of the seed (maximum diagonal value). | |
Returns the first position of the seed in the query. | |
Returns the first position of the seed in the database. | |
The begin position of segment in a seed. | |
Returns the most right diagonal of the seed (minimum diagonal value). | |
Returns the last position of the seed in the query. | |
Returns the last position of the seed in the database. | |
The end position of segment in a seed. | |
Sets a new value for the most left diagonal. | |
Updates the start point of the seed. | |
Updates the start point of the seed. | |
Sets begin position of segment in a seed. | |
Sets a new value for the most right diagonal. | |
Updates the end point of the seed. | |
Updates the end point of the seed. | |
Sets end position of segment in a seed. | |
Returns the diagonal of the start point. |
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