extendSeeds

Function

extendSeeds

Extenstion of seeds.

extendSeeds(container, query, database, direction, MatchExtend)

extendSeeds(begin, end, query, database, direction, MatchExtend)

extendSeeds(container, scoreDropOff, scoreMatrix, query, database, direction, tag)

extendSeeds(begin, end, scoreDropOff, scoreMatrix, query, database, direction, tag)

Parameters

seed	The container with the Seed objects to extend. Types: Container
begin	Iterator pointing to the first value to add.
end	Iterator pointing just behind the last value to add.
query	The query sequence. The database sequence. Types: String
direction	Defines the direction in which the seed should be extended. 0 = left, 1 = right, 2 = both
scoreDropOff	The score drop after which the extension should stop.
scoreMatrix	The scoring sheme. Types: Simple Score
tag	The algorithm to use. Types: GappedXDrop, UngappedXDrop