Function
multiLocalAlignment
Computes multiple local alignments of two sequences.
multiLocalAlignment(strSet, matches, scores, scType, numAlign, tag)
Parameters
strSet
A string set of 2 sequences.
Types: StringSet
matches
The set of all local alignment matches.
scores
The respective local alignment score that match was coming from.
scType
A scoring object.
Types: Score
numAlign
The desired number of local alignments to compute.
tag
A tag indicating the alignment algorithm to use
Remarks: SmithWatermanClump
Return Values
void
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