Function
scoreSeed
Calculates the score of a seed.
scoreSeed(seed, query, database, scoreMatrix)
Parameters
seed
A seed.
Types: ChainedSeed
query
The Query sequence.
Types: String
database
The database sequence.
Types: String
scoreMatrix
The scoring sheme.
Types: Simple Score
Return Values
Score of the seed.
Remarks
Score has not the same value as the resulting alignment. Gaps between diagonals matches are scored as full length gaps.
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