Member Function
Score
Constructor
Score<TValue, Simple> ()
Score<TValue, Simple> (score)
Score<TValue, Simple> (match, mismatch, gap [, gap_open])
Parameters
score
Other Score object. (copy constructor)
match
TValue object.
Default: 0
mismatch
TValue object.
Default: -1
gap
TValue object.
Default: -1
Remarks: The score for a single blank in a gap (linear gap costs).
gap_open
TValue object.
Default: gap
Remarks: The score for the first blank in a gap (affine gap costs).
Member of
Score
Remarks
If both gap and gap_open are specified, the total score of a length n gap is gap_open + (n-1)*gap.
Note: Usually mismatch, gap, and gap_open are negative values.
SeqAn - Sequence Analysis Library - www.seqan.de