Class Specialization
EditDistance
Edit distance scoring scheme.
Score
EditDistance
Score<TValue, EditDistance>
Parameters
TValue
The value type.
Default: int
Specialization of
Functions
alignmentEvaluationGiven a multiple alignment, this function calculates all kinds of alignment statistics. (Score)
globalAlignmentComputes the best global alignment of the two sequences. (Score)
localAlignmentComputes the best local alignment of two sequences. (Score)
matchRefinementRefines (i.e. cuts into smaller parts) a set of pairwise segment matches in such a way that none of the segments partly overlap. They are either identical (fully overlapping) or non-overlapping. Refines (i.e. cuts into smaller parts) a set of pairwise segment matches in such a way that none of the segments partly overlap. They are either identical (fully overlapping) or non-overlapping. (Score)
multiLocalAlignmentComputes multiple local alignments of two sequences. (Score)
scoreThe score for aligning two values according to a scoring scheme. (Score)
smithWatermanComputes the best local alignment of the (two) sequences given in align. (Score)
smithWatermanGetNextComputes next best local alignment. (Score)
sumOfPairsScoreGiven a multiple alignment, this function calculates the sum-of-pairs score. (Score)
Shortcuts
EditDistanceScoreEdit distance scoring scheme.
Remarks
Semantically equivalent to a default contructed Score<int, Simple>.
EditDistance is a synonym for LevenshteinDistance.
SeqAn - Sequence Analysis Library - www.seqan.de