Class Specialization
SimpleSeed
Describes a seed with start and end position and diagonal upper and lower bounds.
Seed
SimpleSeed
Seed<TPosition, SimpleSeed>
Parameters
TPosition
The type number that schuld be used. Must have negative numbers (e.g. int/long).
Specialization of
Metafunctions
SpecThe spec of a class. (Seed)
ValueType of the items in the container. (Seed)
Member Functions
SeedConstructor
Functions
addSeedAdds a seed to an existing set. (Seed)
bandedAlignmentCalculates a banded alignment around a Seed. (Seed)
dimensionDimension of a seed. (Seed)
endDiagonal Returns the diagonal of the end point. (Seed)
extendSeedExtends a seed. (Seed)
leftDiagonal Returns the most left diagonal of the seed (maximum diagonal value). (Seed)
leftDim0 Returns the first position of the seed in the query. (Seed)
leftDim1 Returns the first position of the seed in the database. (Seed)
leftPositionThe begin position of segment in a seed. (Seed)
rightDiagonal Returns the most right diagonal of the seed (minimum diagonal value). (Seed)
rightDim0 Returns the last position of the seed in the query. (Seed)
rightDim1 Returns the last position of the seed in the database. (Seed)
rightPositionThe end position of segment in a seed. (Seed)
setLeftDiagonal Sets a new value for the most left diagonal. (Seed)
setLeftDim0 Updates the start point of the seed. (Seed)
setLeftDim1 Updates the start point of the seed. (Seed)
setLeftPositionSets begin position of segment in a seed. (Seed)
setRightDiagonal Sets a new value for the most right diagonal. (Seed)
setRightDim0 Updates the end point of the seed. (Seed)
setRightDim1 Updates the end point of the seed. (Seed)
setRightPositionSets end position of segment in a seed. (Seed)
startDiagonal Returns the diagonal of the start point. (Seed)
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