Class
BlastHsp
Object for storing Blast HSPs.
BlastHsp<TBlastSpec, TInfoSpec>
Include Headers
blast.h
Parameters
TBlastSpec
The type of Blast report to be parsed.
Types: BlastN, BlastP
Default: BlastN
TInfoSpec
The specializing type determining the amount of information to be stored.
Default: BasicInfo
Remarks: BasicInfo stores begin and end positions on query and database sequence, as well as the alignment. FullInfo stores additional information such as score, e-value...
Specializations
BasicInfoStores only the basic pieces of information delivered with an alignment in a Blast report.
BlastNFor BlastN Blast reports.
BlastPFor BlastP Blast reports.
FullInfoStores all pieces of information delivered with an alignment in a Blast report.
Functions
getAlignmentTurns a HSP from a Blast search into an Alignment object.
getDatabaseBeginThe begin position of the HSP on the database sequence.
getDatabaseEndThe end position of the HSP on the database sequence.
getEValueThe e-value associated with a Blast HSP.
getQueryBeginThe begin position of the HSP on the query sequence.
getQueryEndThe end position of the HSP on the query sequence.
lengthThe number of items/characters.
Example Programs
SeqAn - Sequence Analysis Library - www.seqan.de
 

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