Class
BlastHsp
Object for storing Blast HSPs.
Include Headers
blast.h
Parameters
The type of Blast report to be parsed. Default: BlastN | |
The specializing type determining the amount of information to be stored. Default: BasicInfo Remarks: BasicInfo stores begin and end positions on query and database sequence, as well as the alignment. FullInfo stores additional information such as score, e-value... |
Specializations
Stores only the basic pieces of information delivered with an alignment in a Blast report. | |
For BlastN Blast reports. | |
For BlastP Blast reports. | |
Stores all pieces of information delivered with an alignment in a Blast report. |
Functions
Turns a HSP from a Blast search into an Alignment object. | |
The begin position of the HSP on the database sequence. | |
The end position of the HSP on the database sequence. | |
The e-value associated with a Blast HSP. | |
The begin position of the HSP on the query sequence. | |
The end position of the HSP on the query sequence. | |
The number of items/characters. |
Example Programs
SeqAn - Sequence Analysis Library - www.seqan.de