Class
Fragment
A type for ungapped, pairwise segment matches.
Include Headers
seqan/refinement.h
Parameters
The size type of the underlying sequences. Metafunctions: Size | |
The specializing type. Metafunctions: Spec |
Specializations
| A type for ungapped, pairwise segment matches. | |
| A type for ungapped, pairwise segment matches that may be in reverse orientation. |
Member Functions
| Constructor. |
Functions
| Gets the begin position for this fragment or this vertex descriptor in the sequence. | |
| Gets the length of the label of a given vertex descriptor in the sequence. | |
| Projects a position of one sequence taking part in a pairwise match onto the other sequence. | |
| Returns true if the segment match is in reverse orientation. | |
| Gets the label that is associated with this vertex descriptor or the sequence that is associated with a fragment. | |
| Refines (i.e. cuts into smaller parts) a set of pairwise segment matches in such a way that none of the segments partly overlap. They are either identical (fully overlapping) or non-overlapping. | |
| Gets the sequence id that is associated with this vertex descriptor or with a sequence of a fragment. |
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