Concept
Container
Object that contains other objects.
Concept Definition
Required Metafunctions
GetValueType for reading values.
PositionType of an object that represents a position in a container.
ReferenceReference type.
SizeType of an object that is suitable to hold size information.
ValueType of the items in the container.
Required Functions
appendConcatenate two containers.
appendValueAppends a value to a container.
assignAssigns one object to another object.
assignValueAssigns value to item.
assignValueAssigns value to item.
beginThe begin of a container.
beginPositionBegin position of object in host.
capacityThe maximal length.
endThe end of a container.
endPositionEnd position of object in host.
getValueAccess to the value.
lengthThe number of items/characters.
moveValueAssigns value to item.
replaceReplaces a part of a container with another container.
valueReference to the value.
Implemented by
ModifiedStringAllows to modify arbitrary strings by specializing what differs from an origin.
StringGeneral purpose container for sequences.
Functions
addSeedsAdds several seeds to an existing set. If a merging or chaining algorithm is used seeds are added if the merging or chaining fails.
extendSeeds Extension of seeds.
extendSeedsScore Extension of seeds with score calculation.
extendSeedsScore Extension of seeds with score calculation.
getKmerSimilarityMatrixCreates a matrix storing the number of common q-grams between all pairs of sequences.
getKmerSimilarityMatrixCreates a matrix storing the number of common q-grams between all pairs of sequences.
reverseReverse an object/container in-place.
SeqAn - Sequence Analysis Library - www.seqan.de
 

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