Function
alignment
Returns an alignment of the occurences of the representative substring in the index text.
alignment(iterator)
Include Headers
seqan/index.h
Parameters
iterator
An iterator of a suffix tree.
Remarks
The representative must uniquely occur in every sequence (e.g. in Mums), otherwise the seed returned is one many.
Return Values
A local alignment corresponding to the seed of the iterator.
SeqAn - Sequence Analysis Library - www.seqan.de
 

Page built @2011/02/08 21:37:02