Function
appendAlignedRead
Appends an aligned read entry to a fragment store.
Include Headers
seqan/store.h
Parameters
The fragment store. Types: FragmentStore | |
The id of the read. | |
The id of the contig. | |
The begin position of the alignment. | |
The end position of the alignment. | |
Id of alignedRead pair. Default: |
Remarks
This function appends a single aligned read to the alignedReadStore.
Note that this really only adds a match.
To generate a global alignment out of all of these matches, use convertMatchesToGlobalAlignment.
Return Values
The alignedReadId of the aligned read.
See Also
SeqAn - Sequence Analysis Library - www.seqan.de