Function
appendAlignedRead
Appends an aligned read entry to a fragment store.
appendRead(store, readId, contigId, beginPos, endPos[, pairMatchId])
Include Headers
seqan/store.h
Parameters
store
The fragment store.
readId
The id of the read.
contigId
The id of the contig.
beginPos
The begin position of the alignment.
endPos
The end position of the alignment.
pairMatchId
Id of alignedRead pair.
Default: INVALID_ID, which corresponds to an unmated read.
Remarks
This function appends a single aligned read to the alignedReadStore. Note that this really only adds a match. To generate a global alignment out of all of these matches, use convertMatchesToGlobalAlignment.
Return Values
The alignedReadId of the aligned read.
See Also
SeqAn - Sequence Analysis Library - www.seqan.de
 

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