Function
bandedAlignment
Calculates a banded alignment around a Seed.
Include Headers
seqan/seeds.h
Parameters
An alignment dataStructure containing two sequences (sections). The sequence (parts) must be equal to the part which is covered by the seed. Types: Align | |
The seed for wich the banded alignmnent shall be constructed. Types: Seed | |
A value describing the additional extension of the diagonal band. | |
The score matrix used. Types: Simple Score |
Remarks
Use the function globalAlignment with the tag BandedNeedlemanWunsch or BandedGotoh for more general banded alignment without a seed.
Return Values
The score of the optimal banded alignment given in align.
SeqAn - Sequence Analysis Library - www.seqan.de