convertSetOfPatternsToProfile

Function

Converts a set of sequence patterns into a profile.

convertSetOfPatternsToProfile(profile,l_mers,pseudocount_mode)

Include Headers

seqan/find_motif.h

Parameters

profile	A StringSet of frequency distributions. Types: StringSet
l_mers	The set of sequence patterns. Types: StringSet
pseudocount_mode	The Pseudocount object for determining the pseudocount method. Types: Pseudocount

Remarks

This function is used, for example, in the refinement step of the PROJECTION algorithm to convert the collection of l-mers inside the corresponding buckets into a profile.

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