createQGramIndexSAOnly

Function

Builds the suffix array of a q-gram index on a sequence.

createQGramIndexSAOnly(sa, text, shape, stepSize)

Include Headers

seqan/index.h

Parameters

sa	The resulting list in which all q-grams are sorted alphabetically.
text	The sequence.
shape	The shape to be used. q is the length of this shape Types: Shape
stepSize	Store every stepSize'th q-gram in the index.

Remarks

This function should not be called directly. Please use indexCreate or indexRequire. The resulting tables must have appropriate size before calling this function.

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