Function
extendSeedScore
Extends a seed and increases the score.
extendSeedScore(seed, score, query, database, direction, tag)
extendSeedScore(seed, score, scoreDropOff, scoreMatrix, query, database, direction, tag)
Include Headers
seqan/seeds.h
Parameters
seed
The seed to extend.
Types: Seed
score
A reference to the score of the seed. This will be increased by the score of the extension.
query
The query sequence.
The database sequence.
Types: String, String
direction
Defines the direction in which the seed should be extended. 0 = left, 1 = right, 2 = both
scoreDropOff
The score drop after which the extension should stop. The extension stops if this value is exceeded.
Remarks: Only used for the algorithms UngappedXDrop and GappedXDrop
scoreMatrix
The scoring scheme.
Remarks: Only used for the algorithms UngappedXDrop and GappedXDrop
tag
The algorithm to use.
SeqAn - Sequence Analysis Library - www.seqan.de
 

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