globalChaining

Function

globalChaining

Computes the chain on a set of fragments.

globalChaining(source, dest [, score] [, algorithm])

Include Headers

seqan/seeds.h

Parameters

source	The set of fragments. Remarks: This could be either a container of seeds or a SeedSet object.
dest	Container in which the result should be stored.
score	The gap scoring scheme. Default: Score Zero
algorithm	A tag that identifies the algorithm which is used for chaining. Values: Default: Compiler selects best algorithm. GenericChaining: A simple generic chaining algorithm. RangetreeChaining: An elaborated chaining algorithm for Score Zero, Score Manhattan, and Score ChainSoP scoring schemes. Default: Default

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