Function
scoreSeed
Calculates the score of a seed.
Include Headers
seqan/seeds.h
Parameters
A seed. Types: ChainedSeed | |
The Query sequence. Types: String | |
The database sequence. Types: String | |
The scoring sheme. Types: Simple Score |
Remarks
Score has not the same value as the resulting alignment. Gaps between diagonals matches are scored as full length gaps.
Return Values
Score of the seed.
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