Overview
Concepts
Classes
Specializations
Shortcuts
Functions
Alignments
Alphabets
Array Handling
Atomic Operations
Blast
Chaining
Class
Comparisons
Containers
Content Manipulation
Dependent Objects
Fragment Store
Graph
Index
Input/Output
Iteration
Map
Memory
Misc
Miscellaneous
Miscellaneous:
Modifier
Modifiers
Motif Search
Pipelining
Random
Scoring
Searching
Seed Handling
addSeed
addSeeds
appendDiag
bandedAlignment
bandedChainAlignment
dimension
endDiagonal
extendSeed
extendSeedScore
extendSeeds
extendSeedsScore
getAlignment
leftDiagonal
leftDim0
leftDim1
leftPosition
maximumDistance
obtainID
qualityValue
releaseID
rightDiagonal
rightDim0
rightDim1
rightPosition
scoreSeed
seedScore
setLeftDiagonal
setLeftDim0
setLeftDim1
setLeftPosition
setMaximumDistance
setQualityValue
setRightDiagonal
setRightDim0
setRightDim1
setRightPosition
startDiagonal
Sequences
sequences
Metafunctions
Tags
Adaptions
Examples
Searching