AlignedReadStoreElement

Member Function

Constructor

AlignedReadStoreElement<> ()

AlignedReadStoreElement<TPos[, TGapAnchor[, TSpec]]> ()

AlignedReadStoreElement<TPos[, TGapAnchor[, TSpec]]> (id, readId, contigId, beginPos, endPos[, gaps])

Parameters

id	The alignment id refers to associated alignment information in alignQualityStore or alignedReadTagStore.
readId	Refers to the aligned read in the readStore.
contigId	Refers to the contig in the contigStore the read is aligned with.
beginPos	Begin position of the alignment in gap-space.
endPos	End position of the alignment in gap-space.
gaps	Read gap anchors.

Remarks

The default constructor sets all ids to INVALID_ID and beginPos and endPos to 0.

Member of

SeqAn - Sequence Analysis Library - www.seqan.de