List of terms used in SeqAn
Functionality that allows to access built-in type or data types from external libraries in the same way as SeqAn classes.
Affine Gap Costs
One position within a gap area of an alignment.
A kind of interface used in generic programmic that is not formulated in C++ but only a part of the documentation.
A part of an alignment in which characters of one sequence are not aligned to characters of the other sequence.
A data structure for faster searching in sequences.
Linear Gap Costs
A scoring scheme that defines the score for a gap to be proportional to the length of the gap.
See: Scoring Scheme
The C++ library for sequence analysis.
You are just reading the documentation of this library. For more information see http://www.seqan.de.
An alternative to inheritance for the refinement of classes that is based on class template specialization.
A tree shaped automaton.
SeqAn - Sequence Analysis Library - www.seqan.de