Shortcut
CharString
A string of char.
CharString
Shortcut for
String<char, Alloc<> >
Functions
addArgumentTextReturn a CommandLineOption object extended by an argument text.
addHelpLineAdds an extra line of text below the help text of an option.
addLineAdds a line of text to the help output of the CommandLineParser.
addSectionAdds a new section the help output of the CommandLineParser.
addTitleLineAdds a line of text to the title output of the CommandLineParser.
addUsageLineAdds a line of text to the usage output of the CommandLineParser.
addVersionLineAdds a line of text to the version output of the CommandLineParser.
appendNameAppends a name to a name store.
appendReadAppends a read to a fragment store.
argumentTextReturns the argument text of a CommandLineOption object.
assignCroppedSeqIdExtracts the sequence id up to the first whitespace of a sequence file fragment.
assignQualExtracts the quality values of a sequence file fragment.
assignQualIdExtracts the quality value id of a sequence file fragment.
assignSeqIdExtracts the sequence id of a sequence file fragment.
databaseNameReference to the name (identifier) of the database in a Blast report.
getArgumentValueReturns an argument set on the command line.
getDatabaseNameThe name (identifier) of the database in a Blast report.
getIdByNameAppends a name to a name store.
getQueryNameThe name (identifier) of the query in a Blast report.
loadContigsLoads contigs into fragment store.
loadReadsLoads reads into fragment store.
queryNameReference to the name (identifier) of the query in a Blast report.
setHelpTextSets the help text associated with the CommandLineOption object.
setLongNameSets the long-name of a CommandLineOption object.
See Also
SeqAn - Sequence Analysis Library - www.seqan.de
 

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