Class Specialization
Alphabet for DNA plus phred quality including 'N' character.
The ValueSize of Dna5Q is 5. The nucleotides are enumerated this way: 'A' = 0, 'C' = 1, 'G' = 2, 'T' = 3. The 'N' character ("unkown nucleotide") is encoded by 4.
Objects of type Dna5 can be converted to various other types and vice versa.
Dna5Q is typedef for SimpleType<char,Dna5Q_>, while Dna5Q_ is a helper specialization tag class.
Specialization of
IsSimpleTests type to be simple. (SimpleType)
SpecThe spec of a class. (SimpleType)
ValueType of the items in the container. (SimpleType)
assignAssigns one object to another object. (SimpleType)
assignAssigns one object to another object. (SimpleType)
assignQualityValueAssign quality to a character from an alphabet with integrated quality.
ordValueMaps an alphabet 1-to-1 to the interval [0..ValueSize). (SimpleType)
See Also
SeqAn - Sequence Analysis Library -

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