Class Specialization
Dna5Q
Alphabet for DNA plus phred quality including 'N' character.
Remarks
The ValueSize of Dna5Q is 5.
The nucleotides are enumerated this way: 'A' = 0, 'C' = 1, 'G' = 2, 'T' = 3 .
The 'N' character ("unkown nucleotide") is encoded by 4.
Objects of type Dna5 can be converted to various other types and vice versa.
Specialization of
Implements
Metafunctions
Tests type to be simple. (SimpleType) | |
The spec of a class. (SimpleType) | |
Type of the items in the container. (SimpleType) |
Functions
Assigns one object to another object. (SimpleType) | |
Assigns one object to another object. (SimpleType) | |
Assign quality to a character from an alphabet with integrated quality. | |
Maps an alphabet 1-to-1 to the interval [0..ValueSize). (SimpleType) |
SeqAn - Sequence Analysis Library - www.seqan.de