Class Specialization
StreamReport
BlastReport specialization that works on a file stream (parses hits/HSPs when iterating over them).
BlastReport
StreamReport
BlastReport<TBlastHsp,StreamReport<TFile> >
Include Headers
blast.h
Parameters
TBlastHsp
The type of HSPs to be stored. See BlastHsp
Metafunctions: Hsp
Default: BlastHsp<BlastN,BasicInfo>
TFile
The type of the stream.
Default: std::fstream
Specialization of
Metafunctions
HitBlast Hit type of a Blast object. (BlastReport)
HostType of the object a given object depends on. (BlastReport)
HspBlast HSP type of a Blast object. (BlastReport)
IteratorType of iterator objects that are used to traverse the container. (BlastReport)
Functions
atEndDetermines whether an iterator is at the end position. (BlastReport)
databaseNameReference to the name (identifier) of the database in a Blast report. (BlastReport)
getDatabaseNameThe name (identifier) of the database in a Blast report. (BlastReport)
getNextGet next Blast report from a file containing multiple Blast reports. (BlastReport)
getQueryNameThe name (identifier) of the query in a Blast report. (BlastReport)
queryNameReference to the name (identifier) of the query in a Blast report. (BlastReport)
Example Programs
SeqAn - Sequence Analysis Library - www.seqan.de
 

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