Tag
File Format
A file format.
Include Headers
seqan/file.h
Functions
appendSeqsAppends all sequences stored in files of directory to a StringSet.
assignCroppedSeqIdExtracts the sequence id up to the first whitespace of a sequence file fragment.
assignQualExtracts the quality values of a sequence file fragment.
assignQualIdExtracts the quality value id of a sequence file fragment.
assignSeqExtracts the sequence part of a sequence file fragment.
assignSeqIdExtracts the sequence id of a sequence file fragment.
guessFormatGuesses a file format from the contents of a sequence file.
guessFormatFromFilenameGuesses a file format from a sequence file name.
printAlignmentPrints a window of the visible layout of reads into a outstream.
readLoads a record from file.
readLoads records from a file.
readLoads records from a file.
splitDivides the contents of a sequence file into sequence file fragments separated by a file format specific delimiter.
writeSaves records to a file.
writeSaves records to a file.
Tags
CGViz
CGViz file format for sequences. Only output.
Embl
EMBL format for sequences.
Fasta
FASTA file format for sequences.
Raw
The file contains data in a raw format.
Raw file format for sequences.
Fastq
FASTQ file format for sequences.
QSeq
QSeq format, used for most of the Illumina read files.
Genbank
Genbank format for sequences from the Genbank database.
Fasta alignment
FASTA alignment file format for sequences.
ScoreMatrixFile
Score matrix file.
Gff
Gff annotation file.
Gtf
Gtf annotation file.
Ucsc
Ucsc Genome Browser annotation file (a.k.a. knownGene format).
UcscIsoforms
Ucsc Genome Browser isoforms file (a.k.a. knownIsoforms format).
Amos message file
Amos message file.
Sam
Sam mapping file.
SeqAn - Sequence Analysis Library - www.seqan.de
 

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