Tag
Local Alignment Algorithms
Local alignment algorithm used by localAlignment.
Include Headers
seqan/basic.h
Functions
localAlignmentComputes the best local alignment of two sequences.
localAlignmentComputes the best local alignment of two sequences.
localAlignmentComputes the best local alignment of two sequences.
Values
SmithWaterman
Triggers a Smith Waterman local alignment algorithm.
BandedSmithWaterman
Triggers a banded version of the Smith Waterman local alignment algorithm.
WatermanEggert
Local alignment algorithm by Waterman and Eggert with "declumping" (i.e. only non-overlapping local alignments are computed).
SmithWatermanClump
Same as WatermanEggert.
BandedWatermanEggert
Triggers a banded version of the local alignment algorithm by Waterman and Eggert with "declumping".
BandedSmithWatermanClump
Same as BandedWatermanEggert.
SeqAn - Sequence Analysis Library - www.seqan.de
 

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