Class
AFScore
Used to specify parameters and methods for alignment-free sequence comparison
AFScore<TScoreType>
Include Headers
seqan/alignment_free.h
Parameters
TScoreType
Method to use: N2, D2, D2Star, D2z
Specializations
D2 AFScoreD2 computes the inner product of the kmer count vectors
D2Star AFScoreD2Star computes the inner product of the standardised kmer count vectors
D2z AFScoreD2z computes a z-score of the inner product of kmer count vectors
N2 AFScoreN2 computes the inner product of the standardised neighbourhood kmer count vectors
Functions
alignmentFreeComparisonComputes the pairwise similarity scores for a set of sequences
SeqAn - Sequence Analysis Library - www.seqan.de
 

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