Class
AFScore
Used to specify parameters and methods for alignment-free sequence comparison
Include Headers
seqan/alignment_free.h
Parameters
Method to use: N2, D2, D2Star, D2z |
Specializations
D2 computes the inner product of the kmer count vectors | |
D2Star computes the inner product of the standardised kmer count vectors | |
D2z computes a z-score of the inner product of kmer count vectors | |
N2 computes the inner product of the standardised neighbourhood kmer count vectors |
Functions
Computes the pairwise similarity scores for a set of sequences |
See Also
SeqAn - Sequence Analysis Library - www.seqan.de