Class
AutoSeqFormat
Auto-detects and stores a file format.
TagSelector
AutoSeqFormat
AutoSeqFormat
Include Headers
seqan/file.h
Remarks
Currently, it is defined as TagSelector<SeqFormats>, with:
    typedef
        TagList<Fastq,
        TagList<Fasta,
        TagList<QSeq,
        TagList<Raw> > > >                         SeqFormats;
Specialization of
Metafunctions
FindA metafunction to retrieve the index of a tag in the TagList. (TagSelector)
Functions
appendSeqsAppends all sequences stored in files of directory to a StringSet.
assignCroppedSeqIdExtracts the sequence id up to the first whitespace of a sequence file fragment.
assignQualExtracts the quality values of a sequence file fragment.
assignQualIdExtracts the quality value id of a sequence file fragment.
assignSeqExtracts the sequence part of a sequence file fragment.
assignSeqIdExtracts the sequence id of a sequence file fragment.
getFileFormatExtensionsReturns file format extensions given a format tag. (TagSelector)
guessFormatGuesses a file format from the contents of a sequence file.
guessFormatFromFilenameGuesses a file format from a sequence file name.
splitDivides the contents of a sequence file into sequence file fragments separated by a file format specific delimiter.
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