Class
AutoSeqFormat
Auto-detects and stores a file format.
AutoSeqFormat |
Include Headers
seqan/file.h
Remarks
Currently, it is defined as TagSelector<SeqFormats> , with:
TagList<Fastq,
TagList<Fasta,
TagList<QSeq,
TagList<Raw> > > > SeqFormats;
Specialization of
Metafunctions
A metafunction to retrieve the index of a tag in the TagList. (TagSelector) |
Functions
Appends all sequences stored in files of directory to a StringSet. | |
Extracts the sequence id up to the first whitespace of a sequence file fragment. | |
Extracts the quality values of a sequence file fragment. | |
Extracts the quality value id of a sequence file fragment. | |
Extracts the sequence part of a sequence file fragment. | |
Extracts the sequence id of a sequence file fragment. | |
Returns file format extensions given a format tag. (TagSelector) | |
Guesses a file format from the contents of a sequence file. | |
Guesses a file format from a sequence file name. | |
Divides the contents of a sequence file into sequence file fragments separated by a file format specific delimiter. |
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