ContigStoreElement

Class

ContigStoreElement

Represents a single contig.

ContigStoreElement<>

ContigStoreElement<TContigSeq[, TGapAnchor[, TSpec]]>

Parameters

TContigSeq	Type to store the contig sequence.
TGapAnchor	Type of a contig gap anchor. Types: GapAnchor
TSpec	The specialization type. Default: void

Remarks

Value type of the contigStore string.

Typedefs

TContigSeq	Type of the seq member.
TGapAnchors	Type of the gaps member.
TPos	Type of the fileBeginPos and fileEndPos members.
TSpec	The specialization type.

Data Members

fileBeginPos	Begin position of the contig sequence fragment in the file.
fileEndPos	End position of the contig sequence fragment in the file.
fileId	Refers to a file in the contigFileStore or is INVALID_ID if the contig has no file association.
gaps	String of contig gap anchors. Can be used to create a Spec.AnchorGaps alignment row.
INVALID_ID	Constant to represent an invalid id.
seq	Contig sequence.
usage	Counts the number of locks, see lockContigs.

Member Functions

Constructor

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