Class
LocalMatch
Stores information about local matches.
LocalMatch<TId, TPosition>
Include Headers
seqan/parse_lm.h
Parameters
TId
Type to use for subject/query id.
TPosition
Type to use for storing positions.
Remarks
Matches on the reverse-complement are encoded by the begin position being greater than the end position.
Sequence names are not stored in LocalMatch objects but in the LocalMatchStore they belong to.
Data Members
queryBeginPosBegin position of local match in the query.
queryEndPosEnd position of local match in the query.
queryIdThe id of the query.
subjectBeginPosBegin position of local match in the subject.
subjectEndPosEnd position of local match in the subject.
subjectIdThe id of the subject.
SeqAn - Sequence Analysis Library - www.seqan.de
 

Page built @2013/07/11 09:12:16