Class
MotifFinder
Holds the algorithm parameter values and the motif instance(s) found by the appropriate
motif discovery algorithm.
MotifFinder | |||||||||||||||||||||||||||||||||
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Include Headers
seqan/find_motif.h
Parameters
The motif finding algorithm to search with. | |
The type of sequences to be analyzed. Metafunctions: Value | |
The Rng specialization to use for random number generation. Default: |
Specializations
| Represents the ePatternBranching algorithm of Davila and Rajasekaran. | |
| Represents the Pms1 algorithm developed by Rajasekaran et al. | |
| Represents the Pmsp algorithm of Davila et al. | |
| Represents the PROJECTION algorithm of Buhler and Tompa. |
Metafunctions
| Type of the items in the container or behind an iterator. |
Functions
| Displays all found motif candidates. In the case of the Projection Motif Finder the function displays the consensus pattern of the found motif candidate. | |
| Represents the main function which is used to start the search for noticeable motif patterns. | |
| Gets the motif out of a MotifFinder. If pos is given, the pos-th motif is returned, otherwise the first motif is returned. | |
| Gets number of motifs in the MotifFinder. |
Example Programs
SeqAn - Sequence Analysis Library - www.seqan.de