Class
Seed
Describe a seed.
Include Headers
seqan/seeds.h
Parameters
The seed specialization type. | |
The configuration object to use for this seed. |
Specializations
| Describes a seed with start and end position2 and diagonal upper and lower bounds. | |
| Describes a seed with start and end position and diagonal upper and lower bounds. |
Metafunctions
| Returns type of the value for the diagonal of a seed. | |
| The position type of a SeedDiagonal. | |
| Returns type of the value for the score of a seed. | |
| The position type of a SeedDiagonal. |
Functions
| Adds a seed to an existing set. | |
| Assigns one object to another object. | |
| Returns the diagonal of the start point. | |
| Returns the begin position of the seed in the database. | |
| Returns the begin position of the seed in the query. | |
| Returns the diagonal of the end point. | |
| Returns the end position of the seed in the database. | |
| Returns the end position of the seed in the query. | |
| Extends a seed. | |
| Returns the leftmost diagonal of the seed (minimum diagonal value). | |
| Hands over content from one container to another container. | |
| Returns the score of the seed. | |
| Sets the begin position of the seed in the database. | |
| Sets the begin position of the seed in the query. | |
| Sets the end position of the seed in the database. | |
| Returns the end position of the seed in the query. | |
| Sets a new value for the leftmost diagonal. | |
| Set the score value of a seed. | |
| Sets a new value for the rightmost diagonal. | |
| Returns the rightmost diagonal of the seed (maximum diagonal value). |
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