Class
SeedSet
Handles a set of seeds with local chaining on adding seeds.
Include Headers
seqan/seeds.h
Parameters
Specialization of the underlying seed to use. |
Metafunctions
| Type for reading values. | |
| Type of iterator objects that are used to traverse the container. | |
| Type of an object that represents a position in a container. | |
| Reference type. | |
| Type of an object that is suitable to hold size information. | |
| Type of the items in the container or behind an iterator. |
Functions
| Adds a seed to an existing set. | |
| Adds several seeds to an existing set. If a merging or chaining algorithm is used seeds are added if the merging or chaining fails. | |
| The last item in container. | |
| The begin of a container. | |
| The end of a container. | |
| The first item in container. | |
| The number of items/characters. | |
| Returns the threshold to distinguish between high-scoring and low-scoring seeds. | |
| Sets the threshold at which seeds are considered high-scoring. |
See Also
SeqAn - Sequence Analysis Library - www.seqan.de