Concept
SequenceConcept
Concept for sequences.
Concept Definition
Refines
Required Metafunctions
| Specifies default kind of iterator returned by functions. (ContainerConcept) | |
| Specifies default kind of iterator. (ContainerConcept) | |
| Type of iterator objects that are used to traverse the container. (ContainerConcept) |
Required Functions
| Concatenate two containers. (ContainerConcept) | |
| Appends a value to a container. (ContainerConcept) | |
| Assigns one object to another object. (AssignableConcept) | |
| Assigns value to item. (ContainerConcept) | |
| Determines whether an iterator is at the beginning position. (ContainerConcept) | |
| Determines whether an iterator is at the end position. (ContainerConcept) | |
| The last item in container. (ContainerConcept) | |
| The maximal length. (ContainerConcept) | |
| Capacity for generous expansion. (ContainerConcept) | |
| Test a container for being empty. (ContainerConcept) | |
| The end of a container. (ContainerConcept) | |
| End position of object in host. (ContainerConcept) | |
| Erases a part of a container (ContainerConcept) | |
| Deletes the last item of a container and reduces its size by 1. The container must have a size greater than or equal to 1. (ContainerConcept) | |
| The first item in container. (ContainerConcept) | |
| Access to the value. (ContainerConcept) | |
| Inserts a sequence into a container. (ContainerConcept) | |
| Inserts a single value into a container. (ContainerConcept) | |
| The number of items/characters. (ContainerConcept) | |
| Assigns value to item. (ContainerConcept) | |
| C++ built-in Assignment operator. (AssignableConcept) | |
| Position of an iterator. (ContainerConcept) | |
| Replaces a part of a container with another container. (ContainerConcept) | |
| Increases the capacity. (ContainerConcept) | |
| Resizes a container. If the new length exceeds the old length the new elements are filled with copies of | |
| Makes free space in container (ContainerConcept) | |
| Resizes container to minimum capacity (ContainerConcept) | |
| Reference to the value. (ContainerConcept) |
Include Headers
seqan/basic.h
Implemented by
| Efficient storage of gaps for a sequence. |
Used By Function
Metafunctions
| Returns representation type for a character of a position in a sequence. |
Functions
| Assigns value to item. (ContainerConcept) | |
| Add or update a key-value pair of the current annotation. | |
| The last item in container. (ContainerConcept) | |
| The begin of a container. (ContainerConcept) | |
| Begin position of object in host. (ContainerConcept) | |
| The end of a container. (ContainerConcept) | |
| End position of object in host. (ContainerConcept) | |
| The first item in container. (ContainerConcept) | |
| Returns the identifier of the current annotation. | |
| Returns the identifier of the parent node in the annotation tree of the current annotation. | |
| Returns the type name of the current annotation. | |
| Access to the value. (ContainerConcept) | |
| Given a key, retrieve its value of the current annotation. | |
| The number of items/characters. (ContainerConcept) | |
| Assigns value to item. (ContainerConcept) | |
| Position of an iterator. (ContainerConcept) | |
| Helper function for element access, depending on score type. | |
| Sets the identifier of the current annotation. | |
| Sets the type name of the current annotation. | |
| Write one FASTA or FASTQ record. |
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