Function
alignmentEvaluation
Given a multiple alignment, this function calculates all kinds of alignment statistics.
alignmentEvaluation(graph, score_type, gapExCount, gapCount, pairCount, numPairs, len)
Include Headers
seqan/graph_msa.h
Parameters
graph
An alignment graph.
score_type
A score object.
Types: Score
gapExCount
Number of gap extensions.
gapCount
Number of gaps.
pairCount
Number of aligned pairs.
numPairs
Counter for each pair.
len
Alignment length.
Return Values
Score of the alignment.
SeqAn - Sequence Analysis Library - www.seqan.de
 

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