assignCroppedSeqId

Function

assignCroppedSeqId

Extracts the sequence id up to the first whitespace of a sequence file fragment.

assignCroppedSeqId(id, seqFragment, formatTag)

Include Headers

seqan/file.h

Parameters

id	The resulting cropped sequence id of the fragment (e.g. Fasta Id). Note: The resulting id contains no whitespaces. Types: CharString
seqFragment	A sequence file fragment. Types: String
formatTag	A file format tag. Types: AutoSeqFormat, File Format

Remarks

After calling split on a ConcatDirect StringSet to divide a file into fragments, this function can be used to extract the sequence id up to the first whitespace of every fragment in the StringSet.