bamRecordToAlignment

Function

Convert BamAlignmentRecord to an Align object.

bamRecordToAlignment(align, reference, record)

Include Headers

seqan/bam_io.h

Parameters

align	The alignment to create. Types: Align
reference	String of Dna, Dna5, ... characters. Types: String
record	The alignment record to convert. Types: BamAlignmentRecord

Return Values

void

Member of

BamAlignmentRecord

Examples

StringSet<Dna5String> references;
BamAlignment record;
// Read references and record.
Align<Dna5String> align;
if (record.rID != BamAlignmentRecord::INVALID_REFID)
bamRecordToAlignment(align, references[record.refId], record);

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